Synchronization and Functional Connectivity in Neural Systems

30 May 2018 11:02

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See also: Synchronization; Neural Coding; Neuroscience

Recommended:
• Andreas K. Engel, Pascal Fries and Wolf Singer, "Dynamic Predictions: Oscillations and Synchrony in Top-Down Processing", Nature Reviews Neuroscience 2 (2001): 704--716
• Roberto F. Galán, G. Bard Ermentrout, and Nathaniel N. Urban, "Efficient Estimation of Phase-Resetting Curves in Real Neurons and its Significance for Neural-Network Modeling", Physical Review Letters 94 (2005): 158101
• Mark A. Kramer, Erik Edwards, Maryam Soltani, Mitchel S. Berger and Robert T. Knight and Andrew J. Szeri, "Synchronization Measures of Bursting Data: Application to the Electrocorticogram of an Auditory Event-Related Experiment", Physical Review E 70 (2004): 011914 [This is a very interesting paper, but it omits, so far as I can see, the crucial details of what embedding parameters they used on their empirical data, and how those were selected]
• R. Quian Quiroga, A. Kraskov, T. Kreuz and P. Grassberger, "Performance of different synchronization measures in real data: A case study on electroencephalographic signals," Physical Review E 65 (2002): 041903 = nlin.CD/0109023 [See also the interesting "Comment" by R. B. Duckrow and A. M. Albano, PRE 67 (2003): 063901, and the reply by the original authors, 063902 in the same volume]
• Alexander Thiele and Gene stoner, "Neuronal synchrony does not correlate with motion coherence in cortical area MT," Nature 421 (2003): 366--370
• Maxim Volgushev, Sylvain Chauvette, Mikhail Mukovski and Igor Timofeev, "Precise Long-Range Synchronization of Activity and Silence in Neocortical Neurons during Slow-Wave Sleep", The Journal of Neuroscience 26 (2006): 5665--5672 [Now open access; but thanks to Prof. Timofeev for sending me a reprint at the time.]

Modesty forbids me to recommend:
• Kristina Lisa Klinkner, CRS, and Marcelo F. Camperi, "Measuring Shared Information and Coordinated Activity in Neuronal Networks", q-bio.NC/0506009

To read:
• Aersten, Gerstein, Habib and Palm, "Dynamics of neuronal firing correlation - modulation in effective connectivity", Journal of Neurophysiology 61 (1989): 900-917
• Kazuyuki Aihara and Isao Tokuda, "Possible neural coding with interevent intervals of synchronous firing," Physical Review E 66 (2002): 026212
• Danielle S. Bassett, Andreas Meyer-Lindenberg, Sophie Achard, Thomas Duke, and Edward Bullmore, "Adaptive reconfiguration of fractal small-world human brain functional networks", Proceedings of the National Academy of Sciences 103 (2006): 19518--19523
• Maxim Bazhenov, Igor Timofeev, Mircea Seriade, and Terrence J. Sejnowski, "Model of Thalamocortical Slow-Wave Sleep Oscillations and Transitions to Activated States", The Journal of Neuroscience 22 (2002): 8691--8704 [PDF reprint via Prof. Timofeev]
• C. D. Brody, "Correlations without synchrony", Neural Computation 11 (1999): 1537--1551
• Randy M. Bruno and Bert Sakmann, "Cortex Is Driven by Weak but Synchronously Active Thalamocortical Synapses", Science 312 (2006): 1622--1627
• A. N. Burkitt and G. M. Clark, "Synchronization of the Neural Response to Noisy Periodic Synaptic Input," Neural Computation vol. 13 no. 12 (Dec. 2001)
• Can Cai, Robert E. Kass and Valérie Ventura, "Statistical Assessment of Time-Varying Dependence Between Two Neurons", Journal of Neurophysiology 94 (2005): 2940--2947 [PDF]
• Justin Dauwels, Theophane Weber, Francois Vialatte, Toshimitsu Musha and Andrzej Cichocki, "Quantifying Statistical Interdependence, Part III: $N > 2$ Point Processes", Neural Computation 24 (2012): 408--454
• Christel Faes, Helena Geys, Geert Molenberghs, Marc Aerts, Carmen Cadarso-Su´rez, Carlos Acuna, Monica Cano, "A Flexible Method to Measure Synchrony in Neuronal Firing", Journal of the American Statistical Association 103 (2008): 149--161 ["We propose a new measure of synchrony, the conditional synchrony measure, which is the probability of firing together given that at least one of the two neurons is active. Focus is on the specification of a flexible marginal model for multivariate correlated binary data together with a pseudolikelihood estimation approach..."]
• Pascal Fries, "Neuronal Gamma-Band Synchronization as a Fundamental Process in Cortical Computation", Annual Review of Neuroscience 32 (2009): 209--224
• Joachim Gross, Frank Schmitz, Irmtraud Schnitzler, Klaus Kessler, Kimron Shapiro, Bernhard Hommel and Alfons Schnitzler, "Modulation of long-range neural synchrony reflects temporal limitations of visual attention in humans", PNAS (2004)
• Boris Gutkin, Tim Hely and Jürgen Jost, "Noisy Delays Bifurcation in a Positively Coupled Neural Circuit," physics/0009003
• Kenneth D. Harris, "Neural Signatures of Cell Assembly Organization", Nature Reviews Neuroscience 6 (2005): 399--407
• J. J. Hopfield and Carlos D. Brody, "What is a moment? Transient synchrony as a collective mechanism for spatiotemporal integration", PNAS 98 (2001): 1282-1287
• T. Kreuz, D. Chicharro, R. G. Andrzejak, J. S. Haas and H. D. I. Abarbanel, "Measuring multiple spike train synchrony", arxiv:0903.3083
• Thomas Kreuz, Daniel Chicharro, Martin Greschner, Ralph G Andrzejak, "Time-resolved and time-scale adaptive measures of spike train synchrony", arxiv:1012.0373
• Thomas Kreuz, Julie S. Haas, Alice Morelli, Henry D. I. Abarbanel, Antonio Politi, "Measuring spike train synchrony", physics/0701261
• Michael A. Long, Scott J. Cruikshank, Michael J. Jutras and Barry W. Connors, "Abrupt Maturation of a Spike-Synchronizing Mechanism in Neocortex", Journal of Neuroscience 25 (2005): 7309--7316
• Jörn Niessing, Boris Ebisch, Kerstin E. Schmidt, Michael Niessing, Wolf Singer and Ralf A. W. Galuske, "Hemodynamic Signals Correlate Tightly with Synchronized Gamma Oscillations", Science 309 (2005): 948--951
• Yoshio Sakurai and Susumu Takahashi, "Dynamic Synchrony of Firing in the Monkey Prefrontal Cortex during Working-Memory Tasks", The Journal of Neuroscience 26 (2006): 10141--10153
• Gabriele Scheler, "Network Topology influences Synchronization and Intrinsic Read-out", q-bio.NC/0507037
• Jean-Philippe Thivierge and Paul Cisek, "Nonperiodic Synchronization in Heterogeneous Networks of Spiking Neurons", Journal of Neuroscience 28 (2008): 7968--7978
• Paul H. E. Tiesinga, Jean-Marc Fellous, Emilio Salinas, Jorge V. Jose, and Terrence J. Sejnowski, "Inhibitory synchrony as a mechanism for attentional gain modulation", q-bio.NC/0503019
• Antoine Venaille, Pablo Varona, and Mikhail I. Rabinovich, "Synchronization and coordination of sequences in two neural ensembles", Physical Review E 71 (2005): 061909
• Christoph von der Malsburg, William A. Phillips and Wolf Singer (eds.), Dynamic Coordination in the Brain: From Neurons to Mind [Blurb]
• M.-P. Zorzano and L. Vazquez, "Emergence of Synchronous Oscillations in Neural Networks Excited by Noise", math.DS/0507141 = Physica D 179 (2003): 105--114

To write (with Klinkner and Camperi, in various permutations):
• "Scale, Sparseness and Synchrony in Model Neuronal Networks"
• "A Comparison of Neuronal Synchrony Measures"