Epidemic (Models) on Networks

09 Nov 2019 16:38

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Yet Another Inadequate Placeholder, at the intersection of epidemic models and network data analysis.

Recommended (big picture):
• Mark E. J. Newman, "The spread of epidemic disease on networks", Physical Review E 66 (2002): 016128, arxiv:cond-mat/0205009

Recommended (close-ups):
• Frank Ball, Denis Millison and Gianpaolo Scalia-Tomba, "Epidemics with Two Levels of Mixing", Annals of Applied Probability 7 (1997): 46--89
• Moez Draief and Laurent Massoulié, Epidemics and Rumors in Complex Networks
• Dean Eckles, Elchanan Mossel, M. Amin Rahimian, Subhabrata Sen, "Long ties accelerate noisy threshold-based contagions", arxiv:1810.03579
• Hao Peng, Azadeh Nematzadeh, Daniel M. Romero, Emilio Ferrara, "Network Modularity Controls the Speed of Information Diffusion", arxiv:1910.05870
• Eben Kenah and James M. Robins, "Second look at the spread of epidemics on networks", Physical Review E 76 (2007): 036113, arxiv:q-bio.QM/0610057
• Seth A. Marvel, Travis Martin, Charles R. Doering, David Lusseau and M. E. J. Newman, "The small-world effect is a modern phenomenon", arxiv:1310.2636
• Laura M. Smith, Kristina Lerman, Cristina Garcia-Cardona, Allon G. Percus and Rumi Ghosh, "Spectral Clustering with Epidemic Diffusion", Physical Review E 88 (2013): 042813, arxiv:1303.2663

Noted without recommendation (and, unfairly, no explanation):
• Giannis Moutsinas, Choudhry Shuaib, Weisi Guo, Stephen Jarvis, "Graph hierarchy and spread of infections", arxiv:1908.04358

Disrecommended (to come):

To read:
• Frank Ball and David Sirl, "An SIR epidemic model on a population with random network and household structure, and several types of individuals", Advances in Applied Probability 44 (2012): 63--86
• Romulus Breban, Raffaele Vardavas and Sally Blower, "Linking population-level models with growing networks: A class of epidemic models", Physical Review E 72 (2005): 046110
• Tom Britton, "Epidemic models on social networks -- with inference", arxiv:1908.05517
• Fan Bu, Allison E. Aiello, Jason Xu, Alexander Volfovsky, "Likelihood-based Inference for Partially Observed Epidemics on Dynamic Networks", arxiv:1910.04221
• J.-G. Caputo, A. Knippel, F. Mouatamide, M. Khaladi, "Analysis of an epidemic model on a network", arxiv:1906.07449
• Hocine Cherifi, Gergely Palla, Boleslaw K. Szymanski, Xiaoyan Lu, "On community structure in complex networks: challenges and opportunities", arxiv:1908.04901
• Kihong Chung, Yongjoo Baek, Daniel Kim, Meesoon Ha, Hawoong Jeong, "Generalized epidemic process on modular networks", arxiv:1312.0573
• Emilie Coupechoux, Marc Lelarge, "Contagions in Random Networks with Overlapping Communities", arxiv:1303.4325
• Xinchu Fu, Michael Small, Guanrong Chen, Propagation Dynamics on Complex Networks: Models, Methods and Stability Analysis
• Sergio Gomez, Jesus Gomez-Gardenes, Yamir Moreno, Alex Arenas, "Non-perturbative heterogeneous mean-field approach to epidemic spreading in complex networks", Physical Review E 84 (2011): 036105, arxiv:1106.6184
• Jason Hindes, Sarabjeet Singh, Christopher R. Myers, David J. Schneider, "Epidemic fronts in complex networks with metapopulation structure", arxiv:1304.4310
• Petter Holme, "Model versions and fast algorithms for network epidemiology", arxiv:1403.1011
• Thomas House, "Modelling Epidemics on Networks", arxiv:1111.4875
• Istvan Z. Kiss, Joel C. Miller and Peter L. Simon, Mathematics of Epidemics on Networks: From Exact to Approximate Models
• Marcelo N. Kuperman, "Invited review: Epidemics on social networks", arxiv:1312.3838
• Hsuan-Wei Lee, Nishant Malik, Feng Shi, and Peter J. Mucha, "Social clustering in epidemic spread on coevolving networks", Physical Review E 99 (2019): 062301
• Longzhao Liu, Xin Wang, Yi Zheng, Wenyi Fang, Shaoting Tang, Zhiming Zheng, "Homophily on social networks changes evolutionary advantage in competitive information diffusion", arxiv:1908.05992
• Su-Yu Liu, Andrea Baronchelli, and Nicola Perra, "Contagion dynamics in time-varying metapopulation networks", Physical Review E 87 (2013): 032805
• Naoki Masuda, Konstantin Klemm, Víctor M. Eguíluz, "Temporal networks: slowing down diffusion by long lasting interactions", arxiv:1305.2938
• Joel C. Miller, Anja C. Slim, Erik M. Volz, "Edge-Based Compartmental Modeling for Infectious Disease Spread Part I: An Overview", arxiv:1106.6320
• Joel C. Miller, Erik M. Volz, "Edge-based compartmental modeling for epidemic spread Part II: Model Selection and Hierarchies", arxiv:1106.6319
• Sifat Afroj Moon, Faryad Darabi Sahneh, Caterina Scoglio, "Generalized group-based epidemic model for spreading processes on networks: GgroupEM", arxiv:1908.06057
• Géza Ódor, "Spectral analysis and slow spreading dynamics on complex networks", arxiv:1306.3401
• Joshua L. Payne, Kameron Decker Harris, and Peter Sheridan Dodds, "Exact solutions for social and biological contagion models on mixed directed and undirected, degree-correlated random networks", Physical Review E 84 (2011): 016110
• Xiao-Long Peng, Xin-Jian Xu, Xinchu Fu, and Tao Zhou, "Vaccination intervention on epidemic dynamics in networks", Physical Review E 87 (2013): 022813
• Tim Rogers, "Maximum-entropy moment-closure for stochastic systems on networks", Journal of Statistical Mechanics (2011): P05007, arxiv:1103.4980
• Faryad Darabi Sahneh, Caterina Scoglio, Fahmida N. Chowdhury, "Effect of Coupling on the Epidemic Threshold in Interconnected Complex Networks: A Spectral Analysis", arxiv:1212.4194
• Mile Sikic, Alen Lancic, Nino Antulov-Fantulin, Hrvoje Stefancic, "Epidemic centrality and the underestimated epidemic impact on network peripheral nodes", arxiv:1110.2558
• Daniel Smilkov, Ljupco Kocarev, "The influence of the network topology on epidemic spreading", arxiv:1111.3176
• Daniel Smilkov, Cesar A. Hidalgo, Ljupco Kocarev, "Beyond network structure: How heterogenous susceptibility modulates the spread of epidemics", arxiv:1403.2708
• Michele Starnini, Anna Machens, Ciro Cattuto, Alain Barrat, Romualdo Pastor Satorras, "Immunization strategies for epidemic processes in time-varying contact networks", arxiv:1305.2357
• Francesco Vincenzo Surano, Christian Bongiorno, Lorenzo Zino, Maurizio Porfiri, and Alessandro Rizzo, "Backbone reconstruction in temporal networks from epidemic data", Physical Review E 100 (2019): 042306
• Michael Taylor, Timothy J. Taylor, Istvan Z. Kiss, "Epidemic threshold and control in a dynamic network", Physical Review E 85 (2012): 016103, arxiv:1110.4000
• L. D. Valdez, L. A. Braunstein, S. Havlin, "Epidemic spreading on modular networks: the fear to declare a pandemic", arxiv:1909.09695
• Huijuan Wang, Qian Li, Gregorio D'Agostino, Shlomo Havlin, H. Eugene Stanley, Piet Van Mieghem, "Effect of the Interconnected Network Structure on the Epidemic Threshold", arxiv:1303.0781
• Damian H. Zanette, Sebastian Risau Gusman, "Infection spreading in a population with evolving contacts", arxiv:0711.0874